Welcome to the Dictyostelium purpureum web portal!
This site contains:
- The Genome Browser that allows to visualize each contig of the genome with alignments to
D. discoideum proteins (75% D. discoideum proteins aligned to the
D.purpureum genome)
- The new dictyBase universal dictyostelid BLAST server
where you can use any sequence to search the D.purpureum and D. discoideum genomes
- The D.purpureum Downloads page containing
mappings between different IDs and sequences in FASTA format
- A search function where you can search for gene IDs (e.g.
DPU_G0068768), sequence IDs
(e.g. DPU0071345),
or JGI protein IDs (47329 )
- The genomic sequence has been assembled into 838 contigs containing
12410 predicted proteins
- 36096 EST sequences, 57% of which aligned to the genome
The D.purpureum genome was sequenced as a collaboration
between the
Joint Genome Institute and Baylor College of
Medicine. Please cite:
Comparative genomics of the social amoebae Dictyostelium
discoideum and Dictyostelium purpureum,
Richard Sucgang, Alan Kuo, Xiangjun Tian, William
Salerno, Anup Parikh, Christa L. Feasley, Eileen Dalin,
Hank Tu, Eryong Huang, Kerrie Barry, Erika Lindquist,
Harris Shapiro, David Bruce, Jeremy Schmutz, Petra Fey,
Pascale Gaudet, Christophe Anjard, Madan Babu Mohan,
Siddhartha Basu, Yulia Bushmanova, Hanke van der Wel,
Mariko Katoh, Pedro M. Coutinho, Tamao Saito, Marek
Elias, Pauline Schaap, Robert R. Kay, Bernard
Henrissat, Ludwig Eichinger, Francisco Rivero-Crespo,
Nicholas H. Putnam, Christopher M. West, William F.
Loomis, Rex Chisholm, Gad Shaulsky, Joan E. Strassmann,
David C. Queller, Adam Kuspa and Igor Grigoriev
(manuscript submitted, 2010)