Welcome to the Polysphondylium pallidum web portal!
This site contains:
- Genome Browser: For displaying annotations
on P. pallidum genome.
- BLAST tool: The updated dictyBase universal dictyostelid
blast interface to search for similarities between P. pallidum and other genomes
- Download section :
Download genomic sequences, alignments, mapping etc.
The Polysphondylium pallidum genes have not been manually curated. Please use the gene predictions and nomenclature based on best bidirectional hits with D. discoideum with caution!
Sample entry points for browsing the P. pallidum genome
Genome statistics:
| Feature type |
Number |
| supercontig |
43 |
| contig |
63 |
| gene |
12675 |
| polypeptide |
12398 |
| Feature type |
Min |
Max |
Ave |
Median |
| Loading data from server .... |
Source: Petra Fey
Phylogeny of 5 Dictyostelid species: constructed from 32 orthologous genes in
all species with genome sequence using Entamoeba histolytica as the outgroup. The
statistical support for all the nodes is 100%.
By Pauline Schaap & Gernot Gloeckner
The P. pallidum genome was sequenced as a collaboration between the
Leibniz Institute for Age Research, Fritz Lipmann Institute, and the University of Dundee.
Please cite:
Heidel, Lawal, Felder, Schilde, Helps, Tunggal, Rivero, John, Schleicher, Eichinger, Platzer, Noegel, Schaap & Glockner (2011) 'Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.' Genome Res. 21:
